Annotation of co-expression genes

PH01000160G0990's details annotation

1.Annotation

ICBR annotation: expansin precursor, putative, expressed

Blast result AT3G03220 : 1.20E-96
Blast annotation: expansin A13

2.Location

Scaffold: PH01000160
Strand: -

RegionStartEnd
gene769525773082
mRNA769525773082
exon769525769946
exon772262772577
exon772850773082
CDS769637769946
CDS772262772577
CDS772850772997

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000957DDT Transcription_Regulator(from iTAK)
CMGC_CDK-PITSLRE (from iTAK)
HB-HD-ZIP Transcription_Regulator(from iTAK)
HD-ZIP Transcription_Regulator(from PlantTFDB)
plant-type cell wall organization,
Ether_lipid_metabolism
Endocytosis
Glycerophospholipid_metabolism
extracellular region,
coexpression networkCFinderM001304nucleoside-triphosphatase activity,
ATPase activity, coupled to transmembrane movement of substances,
GT47 GlycosylTransferases
RLK-Pelle_CR4L (from iTAK)
ABC_transporters
ATPase activity,
ATP binding,
nucleotide binding,
SNF2 Transcription_Regulator(from iTAK)
coexpression networkCFinderM001639intracellular_distribution_of_mitochondria
plant-type cell wall organization,
GT8 GlycosylTransferases
extracellular region,
SNF2 Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF03330.17DPBB_168153
PF01357.20Pollen_allerg_1164241

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005576extracellular region
GO:0009664plant-type cell wall organization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.