PH01000171G1030's details annotation
1.Annotation
ICBR annotation: dual specificity protein phosphatase, putative, expressed
Blast result AT2G35680 : 2.00E-67
Blast annotation: Phosphotyrosine protein phosphatases superfamily protein
2.Location
Scaffold: PH01000171
Strand: -
| Region | Start | End |
| gene | 813753 | 819917 |
| mRNA | 813753 | 819917 |
| exon | 813753 | 814887 |
| exon | 816221 | 816478 |
| exon | 817202 | 817291 |
| exon | 817391 | 817473 |
| exon | 818015 | 818108 |
| exon | 818905 | 819027 |
| exon | 819425 | 819917 |
| CDS | 814483 | 814887 |
| CDS | 816221 | 816478 |
| CDS | 817202 | 817291 |
| CDS | 817391 | 817473 |
| CDS | 818015 | 818108 |
| CDS | 818905 | 819027 |
| CDS | 819425 | 819598 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00782.19 | DSPc | 96 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004725 | protein tyrosine phosphatase activity |
| GO:0006470 | protein dephosphorylation |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity |
| GO:0016311 | dephosphorylation |
| GO:0016791 | phosphatase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.