PH01000289G0530's details annotation
1.Annotation
ICBR annotation: YT521-B, putative, expressed
Blast result AT3G13060 : 2.00E-113
Blast annotation: evolutionarily conserved C-terminal region 5
2.Location
Scaffold: PH01000289
Strand: +
| Region | Start | End |
| gene | 367260 | 371277 |
| mRNA | 367260 | 371277 |
| exon | 367260 | 367500 |
| exon | 368340 | 368413 |
| exon | 368494 | 368668 |
| exon | 369024 | 369100 |
| exon | 369180 | 369480 |
| exon | 369601 | 369668 |
| exon | 369840 | 370328 |
| exon | 370487 | 370699 |
| exon | 370847 | 371277 |
| CDS | 367464 | 367500 |
| CDS | 368340 | 368413 |
| CDS | 368494 | 368668 |
| CDS | 369024 | 369100 |
| CDS | 369180 | 369480 |
| CDS | 369601 | 369668 |
| CDS | 369840 | 370328 |
| CDS | 370487 | 370699 |
| CDS | 370847 | 371209 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001684 | heme_a_biosynthetic_process peroxisomal membrane, mitochondrial outer membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04146.14 | YTH | 355 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.