PH01000297G0240's details annotation
1.Annotation
ICBR annotation: polyprenyl synthetase, putative, expressed
Blast result AT5G47770 : 4.00E-139
Blast annotation: farnesyl diphosphate synthase 1
2.Location
Scaffold: PH01000297
Strand: -
| Region | Start | End |
| gene | 149797 | 154688 |
| mRNA | 149797 | 154688 |
| exon | 149797 | 150925 |
| exon | 151361 | 151432 |
| exon | 151501 | 151590 |
| exon | 151703 | 151747 |
| exon | 151986 | 152075 |
| exon | 152188 | 152232 |
| exon | 152325 | 152420 |
| exon | 152524 | 152575 |
| exon | 152760 | 152848 |
| exon | 152935 | 153051 |
| exon | 153214 | 153300 |
| exon | 153383 | 153498 |
| exon | 153586 | 153610 |
| exon | 154421 | 154688 |
| CDS | 150797 | 150925 |
| CDS | 151361 | 151432 |
| CDS | 151501 | 151590 |
| CDS | 151703 | 151747 |
| CDS | 151986 | 152075 |
| CDS | 152188 | 152232 |
| CDS | 152325 | 152420 |
| CDS | 152524 | 152575 |
| CDS | 152760 | 152848 |
| CDS | 152935 | 153051 |
| CDS | 153214 | 153300 |
| CDS | 153383 | 153498 |
| CDS | 153586 | 153610 |
| CDS | 154421 | 154555 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001491 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, glucose-6-phosphate isomerase activity, sterol_24-C-methyltransferase_activity GTP cyclohydrolase II activity, riboflavin biosynthetic process, steroid biosynthetic process, gluconeogenesis, isoprenoid biosynthetic process, |
| coexpression network | CFinderM001771 | Terpenoid_backbone_biosynthesis isoprenoid biosynthetic process, regulation of Rab GTPase activity, Rab GTPase activator activity, acid-amino acid ligase activity, |
| coexpression network | CFinderM001774 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, DNA metabolic process, isoprenoid biosynthetic process, nuclease activity, Nucleotide_excision_repair Terpenoid_backbone_biosynthesis |
| coexpression network | CFinderM001872 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, GTP cyclohydrolase II activity, Riboflavin_metabolism riboflavin biosynthetic process, isoprenoid biosynthetic process, nucleic acid binding, Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00348.16 | polyprenyl_synt | 41 | 283 |
| PF00348.16 | polyprenyl_synt | 284 | 350 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | farnesyl diphosphate synthase [EC:2.5.1.1;EC:2.5.1.10] | ko00900 | K00787 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008299 | isoprenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.