PH01000317G0560's details annotation
1.Annotation
ICBR annotation: DNA repair metallo-beta-lactamase, putative, expressed
Blast result AT1G19025 : 7.20E-39
Blast annotation: DNA repair metallo-beta-lactamase family protein
2.Location
Scaffold: PH01000317
Strand: -
| Region | Start | End |
| gene | 345104 | 348867 |
| mRNA | 345104 | 348867 |
| exon | 345104 | 347294 |
| exon | 347705 | 347911 |
| exon | 348000 | 348211 |
| exon | 348550 | 348867 |
| CDS | 346137 | 347294 |
| CDS | 347705 | 347911 |
| CDS | 348000 | 348211 |
| CDS | 348550 | 348610 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001212 | SCY1_SCYL2 (from iTAK) Ribosome translation, structural constituent of ribosome, |
| coexpression network | CFinderM001213 | Lipoic_acid_metabolism RLK-Pelle_CrRLK1L-1 (from iTAK) TKL-Pl-6 (from iTAK) lipoate biosynthetic process, chloroplast, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07522.13 | DRMBL | 72 | 160 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.