PH01000523G0450's details annotation
1.Annotation
ICBR annotation: ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Blast result AT3G14400 : 2.90E-98
Blast annotation: ubiquitin-specific protease 25
2.Location
Scaffold: PH01000523
Strand: +
| Region | Start | End |
| gene | 348363 | 356527 |
| mRNA | 348363 | 356527 |
| exon | 348363 | 349803 |
| exon | 351024 | 351099 |
| exon | 351230 | 351322 |
| exon | 353137 | 353223 |
| exon | 353315 | 354102 |
| exon | 354883 | 354966 |
| exon | 355920 | 356527 |
| CDS | 349283 | 349803 |
| CDS | 351024 | 351099 |
| CDS | 351230 | 351322 |
| CDS | 353137 | 353223 |
| CDS | 353315 | 354102 |
| CDS | 354883 | 354966 |
| CDS | 355920 | 356040 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000487 | CAMK_AMPK (from iTAK) |
| coexpression network | CFinderM001782 | ubiquitin-dependent protein catabolic process, ubiquitin thiolesterase activity, mechanically-gated_ion_channel_activity SNF2 Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001783 | RLK-Pelle_LRR-XV (from iTAK) RNA_degradation zinc ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00443.28 | UCH | 43 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004221 | ubiquitin thiolesterase activity |
| GO:0006511 | ubiquitin-dependent protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.