CFinderM001782's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
ubiquitin-dependent protein catabolic process,0.000376914GO:0006511
ubiquitin thiolesterase activity,0.001963233GO:0004221
mechanically-gated_ion_channel_activity0.005570053GO:0008381
SNF2 Transcription_Regulator(from iTAK)0.010672624GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000056G1370chromatin remodeling 5AT2G13370 (0.00E+00)
PH01000068G1690related to KPC1AT2G22010 (0.00E+00)
PH01000414G0300-- (-)
PH01000423G0870ubiquitin-specific protease 25AT3G14400 (8.00E-123)
PH01000523G0450ubiquitin-specific protease 25AT3G14400 (2.90E-98)
PH01001553G0280-AT2G48060 (0.00E+00)
PH01005573G0060PHD finger family proteinAT1G77800 (3.40E-47)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000112SNF2 Transcription_Regulator(from iTAK)
chromatin remodeling,
ATP-dependent chromatin remodeling,
CE8 Carbohydrate_Esterases
nucleic acid binding,
helicase activity,
5'-3' exoribonuclease activity,
nucleosome binding,
GT1 GlycosylTransferases
cell wall modification,
nucleus,
cell wall,
nucleobase-containing compound metabolic process,
exonuclease activity,
details
CFinderM000151SNF2 Transcription_Regulator(from iTAK)
response to oxidative stress,
ATP-dependent helicase activity,
helicase activity,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylalanine_metabolism
Phenylpropanoid_biosynthesis
Methane_metabolism
nucleic acid binding,
details
CFinderM000487CAMK_AMPK (from iTAK)
details
CFinderM001017calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
RNA_degradation
details
CFinderM001024poly(A)+ mRNA export from nucleus,
nuclear pore,
details
CFinderM001025NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001316SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ATP-dependent helicase activity,
ATP binding,
monooxygenase activity,
fructose-bisphosphate aldolase activity,
DNA binding,
protein catabolic process,
details
CFinderM001457mRNA_surveillance_pathway
Diterpenoid_biosynthesis
CAMTA Transcription_Regulator(from PlantTFDB)
protein binding,
mechanically-gated_ion_channel_activity
details
CFinderM001546calcium-dependent cysteine-type endopeptidase activity,
mechanically-gated_ion_channel_activity
GH17 Glycoside_Hydrolases
CBM43 Carbohydrate-Binding_Modules
MYB-related Transcription_Regulator(from iTAK)
endoplasmic reticulum,
integral to membrane,
details
CFinderM001783RLK-Pelle_LRR-XV (from iTAK)
RNA_degradation
zinc ion binding,
details

4.Expression profilings