PH01000560G0260's details annotation
1.Annotation
ICBR annotation: haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed
Blast result AT4G21470 : 2.00E-91
Blast annotation: riboflavin kinase/FMN hydrolase
2.Location
Scaffold: PH01000560
Strand: -
| Region | Start | End |
| gene | 176775 | 181445 |
| mRNA | 176775 | 181445 |
| exon | 176775 | 177317 |
| exon | 177413 | 177496 |
| exon | 177563 | 177714 |
| exon | 178636 | 178731 |
| exon | 178822 | 178976 |
| exon | 180601 | 180787 |
| exon | 180891 | 181445 |
| CDS | 177141 | 177317 |
| CDS | 177413 | 177496 |
| CDS | 177563 | 177714 |
| CDS | 178636 | 178731 |
| CDS | 178822 | 178976 |
| CDS | 180601 | 180787 |
| CDS | 180891 | 180966 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000995 | nucleus, riboflavin kinase activity, RLK-Pelle_LRR-II (from iTAK) B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) Riboflavin_metabolism DNA_replication Mismatch_repair Nucleotide_excision_repair riboflavin biosynthetic process, response to hormone stimulus, |
| coexpression network | CFinderM001166 | DNA_replication Nucleotide_excision_repair Mismatch_repair Riboflavin_metabolism histone acetylation, chromatin modification, chromatin silencing at telomere, |
| coexpression network | CFinderM001206 | Riboflavin_metabolism riboflavin kinase activity, riboflavin biosynthetic process, bZIP Transcription_Regulator(from PlantTFDB) nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01687.16 | Flavokinase | 149 | 273 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Riboflavin metabolism | riboflavin kinase [EC:2.7.1.26] | ko00740 | K00861 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008531 | riboflavin kinase activity |
| GO:0009231 | riboflavin biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.