CFinderM001206's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Riboflavin_metabolism0.002435748KEGG
riboflavin kinase activity,0.010210013GO:0008531
riboflavin biosynthetic process,0.017513175GO:0009231
bZIP Transcription_Regulator(from PlantTFDB)0.03012873GFam
nucleosome assembly,0.039986261GO:0006334

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000074G1160RNA-binding (RRM/RBD/RNP motifs) family proteinAT5G04600 (1.20E-63)
PH01000094G1490Ubiquitin-associated (UBA) proteinAT3G56740 (1.00E-98)
PH01000440G0540nucleosome assembly protein 1;2AT2G19480 (3.00E-108)
PH01000560G0260riboflavin kinase/FMN hydrolaseAT4G21470 (2.00E-91)
PH01001649G0250prohibitin 2AT1G03860 (8.00E-122)
PH01001870G0190Basic-leucine zipper (bZIP) transcription factor family proteinAT1G06070 (3.00E-50)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000341exosome_(RNase_complex)
COP9_signalosome
details
CFinderM000439polygalacturonase activity,
nucleosome assembly,
details
CFinderM000995nucleus,
riboflavin kinase activity,
RLK-Pelle_LRR-II (from iTAK)
B3-ARF Transcription_Regulator(from iTAK)
ARF Transcription_Regulator(from PlantTFDB)
Riboflavin_metabolism
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
riboflavin biosynthetic process,
response to hormone stimulus,
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001212SCY1_SCYL2 (from iTAK)
Ribosome
translation,
structural constituent of ribosome,
details
CFinderM001299SNARE_interactions_in_vesicular_transport
Golgi vesicle transport,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001469FAR1 Transcription_Regulator(from PlantTFDB)
CMGC_CDK-CRK7-CDK9 (from iTAK)
RNA_degradation
membrane,
details
CFinderM001516Ribosome_biogenesis_in_eukaryotes
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001517N-acetyl-gamma-glutamyl-phosphate reductase activity,
cellular amino acid biosynthetic process,
cellular amino acid metabolic process,
details
CFinderM001556RNA_transport
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001568FAR1 Transcription_Regulator(from PlantTFDB)
RLK-Pelle_LRR-XV (from iTAK)
details
CFinderM001583endoplasmic reticulum,
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001720RNA_polymerase_II_transcription_cofactor_activity
NAD+ ADP-ribosyltransferase activity,
mediator complex,
nuclear pore,
regulation of transcription from RNA polymerase II promoter,
protein transport,
details
CFinderM001753Endocytosis
HSF Transcription_Regulator(from PlantTFDB)
single-stranded DNA binding,
details
CFinderM001761large ribosomal subunit,
intracellular,
details
CFinderM001802Alanine,_aspartate_and_glutamate_metabolism
cell wall biogenesis,
purine nucleotide biosynthetic process,
galactoside 2-alpha-L-fucosyltransferase activity,
adenylosuccinate synthase activity,
WRKY Transcription_Regulator(from PlantTFDB)
RNA-dependent DNA replication,
Purine_metabolism
nucleosome assembly,
details
CFinderM001808protein binding,
Peroxisome
RNA_degradation
Endocytosis
details

4.Expression profilings