PH01000666G0830's details annotation
1.Annotation
ICBR annotation: exportin 1, putative, expressed
Blast result AT1G72560 : 3.00E-174
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01000666
Strand: +
| Region | Start | End |
| gene | 496990 | 508550 |
| mRNA | 496990 | 508550 |
| exon | 496990 | 499457 |
| exon | 499543 | 499638 |
| exon | 499754 | 499843 |
| exon | 499929 | 500033 |
| exon | 500257 | 500316 |
| exon | 500538 | 500600 |
| exon | 500691 | 500786 |
| exon | 501165 | 501182 |
| exon | 501783 | 501947 |
| exon | 502974 | 503228 |
| exon | 504664 | 504837 |
| exon | 504960 | 505025 |
| exon | 505152 | 505250 |
| exon | 505475 | 505540 |
| exon | 505667 | 505765 |
| exon | 506917 | 507063 |
| exon | 507902 | 508550 |
| CDS | 498198 | 499457 |
| CDS | 499543 | 499638 |
| CDS | 499754 | 499843 |
| CDS | 499929 | 500033 |
| CDS | 500257 | 500316 |
| CDS | 500538 | 500600 |
| CDS | 500691 | 500786 |
| CDS | 501165 | 501182 |
| CDS | 501783 | 501947 |
| CDS | 502974 | 503228 |
| CDS | 504664 | 504837 |
| CDS | 504960 | 505025 |
| CDS | 505152 | 505250 |
| CDS | 505475 | 505540 |
| CDS | 505667 | 505765 |
| CDS | 506917 | 507063 |
| CDS | 507902 | 507991 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000904 | IWS1 Transcription_Regulator(from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis GPI anchor metabolic process, |
| coexpression network | CFinderM001385 | cytoskeleton, regulation of actin filament polymerization, carbon-sulfur lyase activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) RNA_transport |
| coexpression network | CFinderM001414 | PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001435 | Jumonji Transcription_Regulator(from iTAK) PHD Transcription_Regulator(from iTAK) RNA_transport |
| coexpression network | CFinderM001772 | Plant_hormone_signal_transduction outer membrane-bounded periplasmic space, cytoskeleton, regulation of actin filament polymerization, bZIP Transcription_Regulator(from PlantTFDB) nucleosome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08389.11 | Xpo1 | 1 | 111 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | exportin-T | ko03013 | K14288 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.