PH01000724G0090's details annotation
1.Annotation
ICBR annotation: catalase isozyme B, putative, expressed
Blast result AT4G35090 : 0.00E+00
Blast annotation: catalase 2
2.Location
Scaffold: PH01000724
Strand: -
| Region | Start | End |
| gene | 50005 | 57472 |
| mRNA | 50005 | 57472 |
| exon | 50005 | 52006 |
| exon | 53537 | 53630 |
| exon | 53719 | 53786 |
| exon | 53892 | 54107 |
| exon | 54270 | 55046 |
| exon | 55522 | 55799 |
| exon | 56782 | 56878 |
| exon | 57003 | 57472 |
| CDS | 51743 | 52006 |
| CDS | 53537 | 53630 |
| CDS | 53719 | 53786 |
| CDS | 53892 | 54107 |
| CDS | 54270 | 55046 |
| CDS | 55522 | 55799 |
| CDS | 56782 | 56878 |
| CDS | 57003 | 57017 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001345 | C3H Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase complex, catalase activity, membrane, (1->3)-beta-D-glucan biosynthetic process, Tryptophan_metabolism Glyoxylate_and_dicarboxylate_metabolism Peroxisome RNA-dependent DNA replication, Methane_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00199.18 | Catalase | 19 | 398 |
| PF06628.11 | Catalase-rel | 465 | 515 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glyoxylate and dicarboxylate metabolism | catalase [EC:1.11.1.6] | ko00630 | K03781 |
| Methane metabolism | catalase [EC:1.11.1.6] | ko00680 | K03781 |
| Tryptophan metabolism | catalase [EC:1.11.1.6] | ko00380 | K03781 |
| Peroxisome | catalase [EC:1.11.1.6] | ko04146 | K03781 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004096 | catalase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.