PH01000762G0710's details annotation
1.Annotation
ICBR annotation: translocon-associated protein beta domain containing protein, expressed
Blast result AT5G14030 : 1.10E-54
Blast annotation: translocon-associated protein beta (TRAPB) family protein
2.Location
Scaffold: PH01000762
Strand: +
| Region | Start | End |
| gene | 437322 | 442126 |
| mRNA | 437322 | 442126 |
| exon | 437322 | 438520 |
| exon | 440520 | 440618 |
| exon | 440700 | 440808 |
| exon | 440944 | 441015 |
| exon | 441149 | 441154 |
| exon | 441275 | 442126 |
| CDS | 438354 | 438520 |
| CDS | 440520 | 440618 |
| CDS | 440700 | 440808 |
| CDS | 440944 | 441015 |
| CDS | 441149 | 441154 |
| CDS | 441275 | 441394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000970 | Protein_processing_in_endoplasmic_reticulum C3H Transcription_Regulator(from PlantTFDB) RNA_transport |
| coexpression network | CFinderM001407 | threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, proteasome core complex, Proteasome RLK-Pelle_LRR-XIV (from iTAK) Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Protein_export |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05753.13 | TRAP_beta | 10 | 184 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | translocon-associated protein subunit beta | ko04141 | K13250 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005783 | endoplasmic reticulum |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.