CFinderM000970's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Protein_processing_in_endoplasmic_reticulum0.002080078KEGG
C3H Transcription_Regulator(from PlantTFDB)0.020142381GFam
RNA_transport0.044179879KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000437G0170THO complex, subunit 5AT5G42920 (3.00E-140)
PH01000762G0710translocon-associated protein beta (TRAPB) family proteinAT5G14030 (1.10E-54)
PH01001269G0020Ras-related small GTP-binding family proteinAT3G62560 (6.00E-90)
PH01001376G0350Cyclin family proteinAT5G45190 (2.20E-82)
PH01001489G0350Zinc finger C-x8-C-x5-C-x3-H type family proteinAT2G33835 (8.30E-17)
PH01004060G0120G2484-1 proteinAT4G17330 (5.00E-165)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000234single-stranded DNA binding,
LUG Transcription_Regulator(from iTAK)
G-protein coupled receptor activity,
nucleotide-excision repair,
G-protein coupled receptor signaling pathway,
Nucleotide_excision_repair
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000945Protein_processing_in_endoplasmic_reticulum
details
CFinderM000971C3H Transcription_Regulator(from PlantTFDB)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
RNA_transport
details
CFinderM001272details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001407threonine-type endopeptidase activity,
endopeptidase activity,
proteolysis involved in cellular protein catabolic process,
proteasome core complex,
Proteasome
RLK-Pelle_LRR-XIV (from iTAK)
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Protein_export
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details
CFinderM001525MYB-related Transcription_Regulator(from iTAK)
details
CFinderM001602SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
mRNA_surveillance_pathway
transcription initiation, DNA-dependent,
details
CFinderM001678mRNA_cleavage_and_polyadenylation_specificity_factor_complex
mRNA cleavage,
protein retention in ER lumen,
mRNA_polyadenylation
RNA metabolic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
ER retention sequence binding,
details
CFinderM001741protein folding,
Nucleotide_excision_repair
mRNA_surveillance_pathway
Ubiquitin_mediated_proteolysis
peptidyl-prolyl cis-trans isomerase activity,
nucleic acid binding,
details
CFinderM001776Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
details
CFinderM001785transferase activity, transferring pentosyl groups,
Nicotinate_and_nicotinamide_metabolism
Diterpenoid_biosynthesis
details

4.Expression profilings