PH01000789G0720's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT4G04920 : 0.00E+00
Blast annotation: sensitive to freezing 6
2.Location
Scaffold: PH01000789
Strand: +
| Region | Start | End |
| gene | 421273 | 431727 |
| mRNA | 421273 | 431727 |
| exon | 421273 | 421641 |
| exon | 422500 | 422568 |
| exon | 422803 | 422891 |
| exon | 423134 | 423246 |
| exon | 423429 | 423530 |
| exon | 424086 | 424173 |
| exon | 424279 | 424872 |
| exon | 425386 | 426004 |
| exon | 426079 | 426158 |
| exon | 426737 | 426819 |
| exon | 428179 | 428433 |
| exon | 428768 | 428945 |
| exon | 429120 | 429637 |
| exon | 430220 | 430396 |
| exon | 430924 | 431307 |
| exon | 431424 | 431727 |
| CDS | 421421 | 421641 |
| CDS | 422500 | 422568 |
| CDS | 422803 | 422891 |
| CDS | 423134 | 423246 |
| CDS | 423429 | 423530 |
| CDS | 424086 | 424173 |
| CDS | 424279 | 424872 |
| CDS | 425386 | 426004 |
| CDS | 426079 | 426158 |
| CDS | 426737 | 426819 |
| CDS | 428179 | 428433 |
| CDS | 428768 | 428945 |
| CDS | 429120 | 429637 |
| CDS | 430220 | 430396 |
| CDS | 430924 | 431307 |
| CDS | 431424 | 431564 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000496 | cullin-RING ubiquitin ligase complex, ubiquitin protein ligase binding, Pseudo ARR-B Transcription_Regulator(from iTAK) ubiquitin-dependent protein catabolic process, diphosphomevalonate decarboxylase activity, L,L-diaminopimelate_aminotransferase_activity Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM000641 | nucleotide-excision repair, Nucleotide_excision_repair single-stranded DNA binding, protein binding, nuclease activity, endonuclease activity, DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.