CFinderM000641's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleotide-excision repair,0.013104095GO:0006289
Nucleotide_excision_repair0.014136349KEGG
single-stranded DNA binding,0.019819944GO:0003697
protein binding,0.019819944GO:0005515
nuclease activity,0.019819944GO:0004518
endonuclease activity,0.019819944GO:0004519
DNA repair,0.034447105GO:0006281

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000097G0900F-box family proteinAT4G33210 (0.00E+00)
PH01000213G0510F-box family proteinAT4G33210 (0.00E+00)
PH01000408G04605-3 exonuclease family proteinAT3G28030 (0.00E+00)
PH01000723G0180-AT3G58050 (2.30E-59)
PH01000789G0720sensitive to freezing 6AT4G04920 (0.00E+00)
PH01003531G0030-AT1G03290 (2.30E-40)
PH01005644G0020F-box family proteinAT4G33210 (9.00E-121)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000234single-stranded DNA binding,
LUG Transcription_Regulator(from iTAK)
G-protein coupled receptor activity,
nucleotide-excision repair,
G-protein coupled receptor signaling pathway,
Nucleotide_excision_repair
nuclease activity,
endonuclease activity,
DNA repair,
details
CFinderM000402spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
GRAS Transcription_Regulator(from PlantTFDB)
protein binding,
Spliceosome
details
CFinderM000403GRAS Transcription_Regulator(from PlantTFDB)
details
CFinderM000496cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
Pseudo ARR-B Transcription_Regulator(from iTAK)
ubiquitin-dependent protein catabolic process,
diphosphomevalonate decarboxylase activity,
L,L-diaminopimelate_aminotransferase_activity
Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
details
CFinderM001322ubiquitin ligase complex,
protein ubiquitination,
DNA_replication
protein binding,
details
CFinderM001445Nucleotide_excision_repair
nucleotide-excision repair,
endonuclease activity,
nuclease activity,
single-stranded DNA binding,
protein binding,
DNA repair,
protein ubiquitination,
details

4.Expression profilings