PH01000795G0340's details annotation
1.Annotation
ICBR annotation: CGMC_GSK.8 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT4G18710 : 2.00E-106
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000795
Strand: +
| Region | Start | End |
| gene | 271179 | 278400 |
| mRNA | 271179 | 278400 |
| exon | 271179 | 271394 |
| exon | 271980 | 272054 |
| exon | 272314 | 272400 |
| exon | 272505 | 272564 |
| exon | 272646 | 272918 |
| exon | 273008 | 273082 |
| exon | 273183 | 273239 |
| exon | 274662 | 274712 |
| exon | 274976 | 275026 |
| exon | 275129 | 275224 |
| exon | 275655 | 275738 |
| exon | 276045 | 276085 |
| exon | 276777 | 276878 |
| exon | 277135 | 278400 |
| CDS | 271338 | 271394 |
| CDS | 271980 | 272054 |
| CDS | 272314 | 272400 |
| CDS | 272505 | 272564 |
| CDS | 272646 | 272918 |
| CDS | 273008 | 273082 |
| CDS | 273183 | 273239 |
| CDS | 274662 | 274712 |
| CDS | 274976 | 275026 |
| CDS | 275129 | 275224 |
| CDS | 275655 | 275738 |
| CDS | 276045 | 276085 |
| CDS | 276777 | 276878 |
| CDS | 277135 | 277348 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001323 | CMGC_GSK (from iTAK) Glutathione_metabolism Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM001833 | CMGC_GSK (from iTAK) PLATZ Transcription_Regulator(from iTAK) nucleosome, nucleosome assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 3 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.