Gene details

Annotation of co-expression genes

PH01000949G0560's details annotation

1.Annotation

ICBR annotation: pumilio-family RNA binding protein, putative, expressed

Blast result AT2G29190 : 0
Blast annotation: pumilio 2

2.Location

Scaffold: PH01000949
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000998	Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lysine_degradation HB-other Transcription_Regulator(from PlantTFDB) histone_methylation histone_lysine_methylation aromatic amino acid family biosynthetic process, SET Transcription_Regulator(from iTAK)
coexpression network	CFinderM001529	Fanconi_anaemia_nuclear_complex DNA repair, Ubiquitin_mediated_proteolysis
coexpression network	CFinderM001592	DNA_ligation_involved_in_DNA_repair DNA_ligase_activity DNA ligase (ATP) activity, regulation_of_cell_cycle DNA recombination, C3H Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity Mismatch_repair Base_excision_repair Nucleotide_excision_repair DNA_replication DNA binding,
coexpression network	CFinderM001633	TALE Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) Peroxisome

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

    © 2017 All Rights Reserved.