CFinderM001592's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
DNA_ligation_involved_in_DNA_repair0.022681118GO:0051103
DNA_ligase_activity0.023267533GO:0003909
DNA ligase (ATP) activity,0.023267533GO:0003910
regulation_of_cell_cycle0.03621445GO:0051726
DNA recombination,0.03621445GO:0006310
C3H Transcription_Regulator(from PlantTFDB)0.040788539GFam
TALE Transcription_Regulator(from PlantTFDB)0.040788539GFam
SNF2 Transcription_Regulator(from iTAK)0.040788539GFam
HB-BELL Transcription_Regulator(from iTAK)0.040788539GFam
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity0.045188931GO:0000079
Mismatch_repair0.046063959KEGG
Base_excision_repair0.046063959KEGG
Nucleotide_excision_repair0.046063959KEGG
DNA_replication0.046063959KEGG
DNA binding,0.048843659GO:0003677

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000019G0570-AT4G25670 (3.90E-22)
PH01000134G0410BEL1-like homeodomain 6AT4G34610 (4.40E-94)
PH01000634G0180chromatin remodeling 1AT5G66750 (0.00E+00)
PH01000949G0560pumilio 2AT2G29190 (0)
PH01001204G0070DNA ligase 1AT1G08130 (0.00E+00)
PH01002516G0330-AT4G32910 (2.60E-86)
PH01003249G0180zinc finger nuclease 3AT5G16540 (1.20E-46)
PH01010875G0010Cyclin A1;1AT1G44110 (4.10E-95)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000527Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
regulation_of_cell_cycle
aromatic amino acid family biosynthetic process,
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
protein_kinase_binding
details
CFinderM000638Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
3-dehydroquinate synthase activity,
B3 Transcription_Regulator(from PlantTFDB)
SNF2 Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM000998Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Lysine_degradation
HB-other Transcription_Regulator(from PlantTFDB)
histone_methylation
histone_lysine_methylation
aromatic amino acid family biosynthetic process,
SET Transcription_Regulator(from iTAK)
details
CFinderM001002Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
cytokinesis
microtubule cytoskeleton organization,
3-dehydroquinate synthase activity,
details
CFinderM001134Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
details
CFinderM001166DNA_replication
Nucleotide_excision_repair
Mismatch_repair
Riboflavin_metabolism
histone acetylation,
chromatin modification,
chromatin silencing at telomere,
details
CFinderM001179Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
aromatic amino acid family biosynthetic process,
details
CFinderM001529Fanconi_anaemia_nuclear_complex
DNA repair,
Ubiquitin_mediated_proteolysis
details
CFinderM001612Lysine_degradation
nucleus,
HB-other Transcription_Regulator(from PlantTFDB)
histone_lysine_methylation
regulation_of_cell_cycle
histone_methylation
SET Transcription_Regulator(from iTAK)
regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity
details
CFinderM001633TALE Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
Peroxisome
details

4.Expression profilings