PH01001037G0590's details annotation
1.Annotation
ICBR annotation: PX domain containing protein, expressed
Blast result AT3G56140 : 0.00E+00
Blast annotation: Protein of unknown function (DUF399 and DUF3411)
2.Location
Scaffold: PH01001037
Strand: -
| Region | Start | End |
| gene | 355951 | 362393 |
| mRNA | 355951 | 362393 |
| exon | 355951 | 356616 |
| exon | 356895 | 357051 |
| exon | 357798 | 358343 |
| exon | 358577 | 358684 |
| exon | 359128 | 359658 |
| exon | 360090 | 360219 |
| exon | 361288 | 362393 |
| CDS | 356018 | 356616 |
| CDS | 356895 | 357051 |
| CDS | 357798 | 358343 |
| CDS | 358577 | 358684 |
| CDS | 359128 | 359658 |
| CDS | 360090 | 360219 |
| CDS | 361288 | 361559 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001244 | iron-sulfur cluster assembly, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04187.12 | Cofac_haem_bdg | 24 | 244 |
| PF11891.7 | RETICULATA-like | 351 | 534 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.