Annotation of co-expression genes

PH01001228G0480's details annotation

1.Annotation

ICBR annotation: gibberellin receptor GID1L2, putative, expressed

Blast result AT3G48690 : 1.30E-60
Blast annotation: alpha/beta-Hydrolases superfamily protein

2.Location

Scaffold: PH01001228
Strand: -

RegionStartEnd
gene310819317246
mRNA310819317246
exon310819312400
exon312944313894
exon315527315569
exon316956317246
CDS312017312400
CDS312944313894
CDS315527315569
CDS316956317227

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000287thiamine biosynthetic process,
Pyruvate_metabolism
Carbon_fixation_in_photosynthetic_organisms
iron-sulfur cluster binding,
Zeatin_biosynthesis
Thiamine_metabolism
coexpression networkCFinderM000841glutamate biosynthetic process,
glutamate synthase activity,
oxidoreductase activity, acting on the CH-NH2 group of donors,
2 iron, 2 sulfur cluster binding,
oxidoreductase activity,
bHLH Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07859.12Abhydrolase_3189406
PF00931.21NB-ARC417543

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0008152metabolic process
GO:0016787hydrolase activity
GO:0043531ADP binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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