PH01001232G0200's details annotation
1.Annotation
ICBR annotation: transcription factor-related, putative, expressed
Blast result AT1G17450 : 2.00E-129
Blast annotation: B-block binding subunit of TFIIIC
2.Location
Scaffold: PH01001232
Strand: +
| Region | Start | End |
| gene | 101323 | 109847 |
| mRNA | 101323 | 109847 |
| exon | 101323 | 101844 |
| exon | 103291 | 103382 |
| exon | 103548 | 103625 |
| exon | 104452 | 105201 |
| exon | 105440 | 105718 |
| exon | 106458 | 106613 |
| exon | 108157 | 108596 |
| exon | 108716 | 109178 |
| exon | 109270 | 109620 |
| exon | 109749 | 109847 |
| CDS | 101520 | 101844 |
| CDS | 103291 | 103382 |
| CDS | 103548 | 103625 |
| CDS | 104452 | 105201 |
| CDS | 105440 | 105718 |
| CDS | 106458 | 106613 |
| CDS | 108157 | 108596 |
| CDS | 108716 | 109178 |
| CDS | 109270 | 109620 |
| CDS | 109749 | 109835 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000938 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, binding, mRNA_surveillance_pathway hydrogen ion transmembrane transporter activity, ATP hydrolysis coupled proton transport, TORC1_complex Phagosome Oxidative_phosphorylation phosphotransferase activity, alcohol group as acceptor, TOR_signaling rRNA_catabolic_process |
| coexpression network | CFinderM001230 | base-excision repair, mRNA_surveillance_pathway DNA repair, |
| coexpression network | CFinderM001484 | RLK-Pelle_RLCK-VI (from iTAK) mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.