CFinderM001230's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
base-excision repair,0.015159991GO:0006284
mRNA_surveillance_pathway0.021928485KEGG
DNA repair,0.029575411GO:0006281

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000070G1130P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT1G16800 (0.00E+00)
PH01000302G0960zinc knuckle (CCHC-type) family proteinAT5G49930 (0.00E+00)
PH01001209G0060Ataxia telangiectasia-mutated and RAD3-relatedAT5G40820 (5.20E-46)
PH01001232G0200B-block binding subunit of TFIIICAT1G17450 (2.00E-129)
PH01001699G0340P-loop containing nucleoside triphosphate hydrolases superfamily proteinAT3G15120 (0.00E+00)
PH01002088G0100HhH-GPD base excision DNA repair family proteinAT5G04560 (3.00E-119)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000068cellular protein modification process,
ubiquitin-protein ligase activity,
Ubiquitin_mediated_proteolysis
binding,
intracellular,
protein binding,
CE8 Carbohydrate_Esterases
GH28 Glycoside_Hydrolases
Alfin-like Transcription_Regulator(from iTAK)
SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
TORC1_complex
details
CFinderM000220phospholipid metabolic process,
N-methyltransferase activity,
Phosphatidylinositol_signaling_system
phosphoglycolate phosphatase activity,
details
CFinderM000302nucleosome assembly,
nucleosome,
protein_heterodimerization_activity
LBD Transcription_Regulator(from PlantTFDB)
RNA_degradation
nucleic acid binding,
details
CFinderM000503details
CFinderM000545binding,
SNF2 Transcription_Regulator(from iTAK)
helicase activity,
ubiquitin-protein ligase activity,
cellular protein modification process,
TOR_signaling
nucleic acid binding,
TORC1_complex
DNA binding,
hydrolase_activity,_acting_on_acid_anhydrides
RNA metabolic process,
RNA_transport
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay,
Ubiquitin_mediated_proteolysis
nucleotide binding,
RNA binding,
ATP binding,
protein binding,
details
CFinderM000862DBP Transcription_Regulator(from iTAK)
Golgi stack,
GPI-anchor transamidase complex,
details
CFinderM000938proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
binding,
mRNA_surveillance_pathway
hydrogen ion transmembrane transporter activity,
ATP hydrolysis coupled proton transport,
TORC1_complex
Phagosome
Oxidative_phosphorylation
phosphotransferase activity, alcohol group as acceptor,
TOR_signaling
rRNA_catabolic_process
details
CFinderM001310mRNA_surveillance_pathway
binding,
details
CFinderM001484RLK-Pelle_RLCK-VI (from iTAK)
mRNA_surveillance_pathway
details
CFinderM001821protein processing,
mRNA_surveillance_pathway
protein binding,
details
CFinderM001853peroxisome organization,
integral_component_of_peroxisomal_membrane
cullin-RING ubiquitin ligase complex,
bZIP Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings