PH01001672G0230's details annotation
1.Annotation
ICBR annotation: Ser/Thr-rich protein T10 in DGCR region, putative, expressed
Blast result AT4G38260 : 5.30E-73
Blast annotation: Protein of unknown function (DUF833)
2.Location
Scaffold: PH01001672
Strand: -
| Region | Start | End |
| gene | 126441 | 128900 |
| mRNA | 126441 | 128900 |
| exon | 126441 | 126725 |
| exon | 126920 | 127114 |
| exon | 127579 | 127785 |
| exon | 128236 | 128425 |
| exon | 128740 | 128900 |
| CDS | 126600 | 126725 |
| CDS | 126920 | 127114 |
| CDS | 127579 | 127785 |
| CDS | 128236 | 128425 |
| CDS | 128740 | 128822 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05742.11 | TANGO2 | 1 | 252 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.