PH01001726G0190's details annotation
1.Annotation
ICBR annotation: vesicle-fusing ATPase, putative, expressed
Blast result AT4G04910 : 1.60E-35
Blast annotation: AAA-type ATPase family protein
2.Location
Scaffold: PH01001726
Strand: -
| Region | Start | End |
| gene | 194825 | 197497 |
| mRNA | 194825 | 197497 |
| exon | 194825 | 195327 |
| exon | 195511 | 195594 |
| exon | 195645 | 195729 |
| exon | 195815 | 195861 |
| exon | 196682 | 197497 |
| CDS | 195064 | 195327 |
| CDS | 195511 | 195594 |
| CDS | 195645 | 195729 |
| CDS | 195815 | 195861 |
| CDS | 196682 | 196870 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001262 | RLK-Pelle_LRR-II (from iTAK) bZIP Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, nucleobase-containing compound kinase activity, nucleotide_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02933.16 | CDC48_2 | 119 | 157 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.