PH01001902G0140's details annotation
1.Annotation
ICBR annotation: cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed
Blast result AT3G27240 : 9.00E-142
Blast annotation: Cytochrome C1 family
2.Location
Scaffold: PH01001902
Strand: -
| Region | Start | End |
| gene | 87537 | 92033 |
| mRNA | 87537 | 92033 |
| exon | 87537 | 87711 |
| exon | 87809 | 87874 |
| exon | 87962 | 88078 |
| exon | 88739 | 88810 |
| exon | 88897 | 89176 |
| exon | 89422 | 89624 |
| exon | 90181 | 92033 |
| CDS | 87595 | 87711 |
| CDS | 87809 | 87874 |
| CDS | 87962 | 88078 |
| CDS | 88739 | 88810 |
| CDS | 88897 | 89176 |
| CDS | 89422 | 89624 |
| CDS | 90181 | 90240 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000237 | solute:hydrogen antiporter activity, |
| coexpression network | CFinderM000883 | sterol metabolic process, nuclear chromosome, cholestenol delta-isomerase activity, Nitrogen_metabolism Steroid_biosynthesis |
| coexpression network | CFinderM001386 | PHD Transcription_Regulator(from iTAK) COPII vesicle coat, Nitrogen_metabolism ER to Golgi vesicle-mediated transport, Oxidative_phosphorylation |
| coexpression network | CFinderM001460 | nucleus, CAMTA Transcription_Regulator(from PlantTFDB) Nitrogen_metabolism Oxidative_phosphorylation bZIP Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001806 | PHD Transcription_Regulator(from iTAK) Nitrogen_metabolism Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02167.14 | Cytochrom_C1 | 75 | 291 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Oxidative phosphorylation | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00190 | K00413 |
| Nitrogen metabolism | ubiquinol-cytochrome c reductase cytochrome c1 subuni[EC:1.10.2.2] | ko00910 | K00413 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0009055 | electron carrier activity |
| GO:0020037 | heme binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.