CFinderM000883's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
sterol metabolic process,0.002811973GO:0016125
nuclear chromosome,0.018215498GO:0000228
cholestenol delta-isomerase activity,0.023864943GO:0047750
Nitrogen_metabolism0.032489869KEGG
Steroid_biosynthesis0.032489869KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000023G0830histone mono-ubiquitination 1AT2G44950 (3.00E-142)
PH01000068G1750histone acetyltransferase of the MYST family 1AT5G64610 (0.00E+00)
PH01000244G0890sister chromatid cohesion 1 protein 4AT5G16270 (3.90E-60)
PH01000255G0120LUC7 related proteinAT5G17440 (7.60E-32)
PH01000273G0700Mitochondrial substrate carrier family proteinAT5G19760 (2.00E-120)
PH01000800G0330Emsy N Terminus (ENT)/ plant Tudor-like domains-containing proteinAT5G13020 (2.60E-30)
PH01001902G0140Cytochrome C1 familyAT3G27240 (9.00E-142)
PH01002353G0020C-8,7 sterol isomeraseAT1G20050 (6.60E-68)
PH01002669G0210-- (-)
PH01002993G0180RNA-binding (RRM/RBD/RNP motifs) family proteinAT2G44710 (2.60E-58)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000116nuclear chromosome,
riboflavin synthase complex,
riboflavin biosynthetic process,
phosphoglycerate kinase activity,
glycolysis,
Riboflavin_metabolism
details
CFinderM000117nuclear chromosome,
Glycolysis_/_Gluconeogenesis
Ino80_complex
ATP citrate synthase activity,
phosphoglycerate kinase activity,
succinate-CoA ligase (ADP-forming) activity,
details
CFinderM000237solute:hydrogen antiporter activity,
details
CFinderM001024poly(A)+ mRNA export from nucleus,
nuclear pore,
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001386PHD Transcription_Regulator(from iTAK)
COPII vesicle coat,
Nitrogen_metabolism
ER to Golgi vesicle-mediated transport,
Oxidative_phosphorylation
details
CFinderM001460nucleus,
CAMTA Transcription_Regulator(from PlantTFDB)
Nitrogen_metabolism
Oxidative_phosphorylation
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
details
CFinderM001564Oxidative_phosphorylation
glycopeptide_alpha-N-acetylgalactosaminidase_activity
inorganic diphosphatase activity,
phosphate-containing compound metabolic process,
details
CFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
details
CFinderM001668poly(A)+ mRNA export from nucleus,
SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
large ribosomal subunit,
nuclear pore,
details
CFinderM001806PHD Transcription_Regulator(from iTAK)
Nitrogen_metabolism
Oxidative_phosphorylation
details
CFinderM001835MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
nuclear chromosome,
chromatin binding,
details
CFinderM001866sterol metabolic process,
Steroid_biosynthesis
cholestenol delta-isomerase activity,
protein catabolic process,
MYB_related Transcription_Regulator(from PlantTFDB)
C3H Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
details

4.Expression profilings


Show details about module gene expression profiling