PH01002240G0140's details annotation
1.Annotation
ICBR annotation: heat shock protein DnaJ, putative, expressed
Blast result AT5G06410 : 2.10E-65
Blast annotation: DNAJ heat shock N-terminal domain-containing protein
2.Location
Scaffold: PH01002240
Strand: +
| Region | Start | End |
| gene | 107477 | 117298 |
| mRNA | 107477 | 117298 |
| exon | 107477 | 108100 |
| exon | 109187 | 109283 |
| exon | 109545 | 109634 |
| exon | 116175 | 116240 |
| exon | 116411 | 116479 |
| exon | 116573 | 117298 |
| CDS | 107790 | 108100 |
| CDS | 109187 | 109283 |
| CDS | 109545 | 109634 |
| CDS | 116175 | 116240 |
| CDS | 116411 | 116479 |
| CDS | 116573 | 116710 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001361 | transcription factor TFIIF complex, protein_oligomerization cell communication, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors phosphatidylinositol binding, chaperone binding, bHLH Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00226.30 | DnaJ | 97 | 165 |
| PF07743.12 | HSCB_C | 182 | 251 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006457 | protein folding |
| GO:0051087 | chaperone binding |
| GO:0051259 | protein oligomerization |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.