CFinderM001361's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
transcription factor TFIIF complex,0.000749988GO:0005674
protein_oligomerization0.004687793GO:0051259
cell communication,0.007285857GO:0007154
transcription initiation from RNA polymerase II promoter,0.007285857GO:0006367
Basal_transcription_factors0.008596606KEGG
phosphatidylinositol binding,0.033053811GO:0035091
chaperone binding,0.035769144GO:0051087
bHLH Transcription_Regulator(from PlantTFDB)0.046921837GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000042G1710SH3 domain-containing proteinAT4G34660 (2.00E-132)
PH01000402G0010Transcription initiation factor IIF, beta subunitAT3G52270 (1.60E-66)
PH01001876G0340BIG PETAL PAT1G59640 (2.20E-52)
PH01002240G0140DNAJ heat shock N-terminal domain-containing proteinAT5G06410 (2.10E-65)
PH01004186G0100-- (-)
PH01004659G0090Phox (PX) domain-containing proteinAT4G32160 (5.00E-108)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000454DNA replication, synthesis of RNA primer,
DNA primase activity,
details
CFinderM000886Spliceosome
RNA_degradation
details
CFinderM001358spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
details
CFinderM001405transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
Oxidative_phosphorylation
protein catabolic process,
details
CFinderM001618transcription factor TFIIF complex,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Endocytosis
protein catabolic process,
details
CFinderM001657Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
phosphatidylinositol metabolic process,
Phagosome
cellular protein metabolic process,
phosphatidylinositol phosphate kinase activity,
aspartic-type endopeptidase activity,
GH35 Glycoside_Hydrolases
phospholipid transport,
proteolysis,
metal ion binding,
details
CFinderM001814Spliceosome
nucleotide binding,
snRNA_binding
nuclear mRNA splicing, via spliceosome,
phospholipid transport,
phospholipid-translocating ATPase activity,
cation transport,
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details
CFinderM001840transcription factor TFIIF complex,
STE_STE11 (from iTAK)
diphosphomevalonate decarboxylase activity,
ATP binding,
histone deacetylase activity,
histone deacetylation,
transcription initiation from RNA polymerase II promoter,
Basal_transcription_factors
Terpenoid_backbone_biosynthesis
protein catabolic process,
isoprenoid biosynthetic process,
Endocytosis
details

4.Expression profilings