PH01002273G0160's details annotation
1.Annotation
ICBR annotation: elongation factor, putative, expressed
Blast result AT2G45030 : 4.70E-42
Blast annotation: Translation elongation factor EFG/EF2 protein
2.Location
Scaffold: PH01002273
Strand: -
| Region | Start | End |
| gene | 115035 | 119893 |
| mRNA | 115035 | 119893 |
| exon | 115035 | 115395 |
| exon | 115739 | 115885 |
| exon | 116344 | 116447 |
| exon | 116845 | 116898 |
| exon | 117388 | 117452 |
| exon | 117916 | 118016 |
| exon | 118130 | 118285 |
| exon | 118629 | 119893 |
| CDS | 115291 | 115395 |
| CDS | 115739 | 115885 |
| CDS | 116344 | 116447 |
| CDS | 116845 | 116898 |
| CDS | 117388 | 117452 |
| CDS | 117916 | 118016 |
| CDS | 118130 | 118285 |
| CDS | 118629 | 118652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03764.17 | EFG_IV | 20 | 65 |
| PF00679.23 | EFG_C | 68 | 115 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.