PH01002296G0240's details annotation
1.Annotation
ICBR annotation: pentatricopeptide repeat domain containing protein, putative, expressed
Blast result AT1G05600 : 2.60E-62
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein
2.Location
Scaffold: PH01002296
Strand: -
| Region | Start | End |
| gene | 159962 | 163220 |
| mRNA | 159962 | 163220 |
| exon | 159962 | 163220 |
| CDS | 160868 | 161821 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000069 | Ribosome_biogenesis_in_eukaryotes Ino80_complex ATP-dependent_5'-3'_DNA_helicase_activity rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA methyltransferase activity, rRNA (adenine) methyltransferase activity, snoRNA binding, snRNA_pseudouridine_synthesis rRNA modification, |
| coexpression network | CFinderM001466 | nucleobase-containing compound metabolic process, eukaryotic translation initiation factor 3 complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 13 | 37 |
| PF01535.19 | PPR | 50 | 80 |
| PF13812.5 | PPR_3 | 140 | 197 |
| PF01535.19 | PPR | 227 | 253 |
| PF01535.19 | PPR | 263 | 290 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.