|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Ribosome_biogenesis_in_eukaryotes | 0.003435922 | KEGG | | Ino80_complex | 0.022306078 | GO:0031011 | | ATP-dependent_5'-3'_DNA_helicase_activity | 0.028276811 | GO:0043141 | | rRNA (adenine-N6,N6-)-dimethyltransferase activity, | 0.028276811 | GO:0000179 | | rRNA methyltransferase activity, | 0.028276811 | GO:0008649 | | rRNA (adenine) methyltransferase activity, | 0.028276811 | GO:0016433 | | snoRNA binding, | 0.028276811 | GO:0030515 | | snRNA_pseudouridine_synthesis | 0.02972503 | GO:0031120 | | rRNA modification, | 0.02972503 | GO:0000154 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000068G1710 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT5G67630 (8.00E-102) | | PH01000161G0830 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | AT5G10460 (7.00E-111) | | PH01000247G0680 | Ribosomal RNA adenine dimethylase family protein | AT2G47420 (4.00E-118) | | PH01000306G1190 | Transducin/WD40 repeat-like superfamily protein | AT5G14050 (1.00E-164) | | PH01000319G0240 | - | AT4G38100 (8.90E-25) | | PH01000990G0300 | Hyaluronan / mRNA binding family | AT4G16830 (1.80E-31) | | PH01001059G0350 | homologue of NAP57 | AT3G57150 (8.00E-164) | | PH01001837G0230 | nuclear assembly factor 1 | AT1G03530 (7.70E-58) | | PH01001913G0150 | Ribosomal protein L4/L1 family | AT3G09630 (1.00E-103) | | PH01002296G0240 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT1G05600 (2.60E-62) | | PH01002852G0080 | - | AT1G24460 (2.00E-172) | | PH01003529G0220 | RNA-binding (RRM/RBD/RNP motifs) family protein | AT4G14300 (7.20E-78) | | PH01006302G0030 | Transcription elongation factor (TFIIS) family protein | AT4G24200 (2.80E-50) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000014 | transcription, DNA-dependent,
Spliceosome
| details | | CFinderM000077 | transcription, DNA-dependent,
| details | | CFinderM000129 | GH9 Glycoside_Hydrolases
RLK-Pelle_LRR-IV (from iTAK)
| details | | CFinderM000196 | SCY1_SCYL2 (from iTAK)
phosphatidylinositol phosphorylation,
ubiquitin ligase complex,
protein ubiquitination,
binding,
| details | | CFinderM000204 | CMGC_CLK (from iTAK)
histone deacetylation,
ubiquitin ligase complex,
histone deacetylase activity,
| details | | CFinderM000205 | RLK-Pelle_LRR-XI-2 (from iTAK)
mRNA processing,
| details | | CFinderM000241 | signal peptidase complex,
Protein_export
signal peptide processing,
| details | | CFinderM000259 | transcription, DNA-dependent,
RNA_polymerase
Purine_metabolism
Pyrimidine_metabolism
| details | | CFinderM000306 | protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
large ribosomal subunit,
transcription, DNA-dependent,
| details | | CFinderM000307 | amine metabolic process,
quinone binding,
copper ion binding,
protein import into mitochondrial matrix,
mitochondrial outer membrane translocase complex,
Ribosome_biogenesis_in_eukaryotes
transcription, DNA-dependent,
| details | | CFinderM000341 | exosome_(RNase_complex)
COP9_signalosome
| details | | CFinderM000411 | transcription, DNA-dependent,
nucleus,
bHLH Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000457 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000463 | exosome_(RNase_complex)
RNA_degradation
| details | | CFinderM000470 | SCY1_SCYL2 (from iTAK)
| details | | CFinderM000692 | CMGC_CLK (from iTAK)
ornithine_metabolic_process
histone deacetylation,
ornithine carbamoyltransferase activity,
carboxyl- or carbamoyltransferase activity,
histone deacetylase activity,
Arginine_and_proline_metabolism
cellular amino acid metabolic process,
| details | | CFinderM000696 | snRNA_pseudouridine_synthesis
snoRNA binding,
ribosome biogenesis,
MYB_related Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001466 | nucleobase-containing compound metabolic process,
eukaryotic translation initiation factor 3 complex,
| details | | CFinderM001493 | ARID Transcription_Regulator(from iTAK)
magnesium_ion_transport
magnesium_ion_transmembrane_transporter_activity
| details | | CFinderM001850 | lipid metabolic process,
| details | | CFinderM001875 | histone deacetylation,
histone deacetylase activity,
DNA_replication
Mismatch_repair
Nucleotide_excision_repair
DNA_replication
| details |
4.Expression profilings |
