PH01002580G0020's details annotation
1.Annotation
ICBR annotation: RNA recognition motif, putative, expressed
Blast result AT3G23900 : 1.30E-28
Blast annotation: RNA recognition motif (RRM)-containing protein
2.Location
Scaffold: PH01002580
Strand: +
| Region | Start | End |
| gene | 5508 | 11951 |
| mRNA | 5508 | 11951 |
| exon | 5508 | 6434 |
| exon | 7461 | 7974 |
| exon | 8355 | 8477 |
| exon | 8935 | 9830 |
| exon | 11257 | 11951 |
| CDS | 6431 | 6434 |
| CDS | 7461 | 7974 |
| CDS | 8355 | 8477 |
| CDS | 8935 | 9830 |
| CDS | 11257 | 11420 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000834 | Ubiquitin_mediated_proteolysis |
| coexpression network | CFinderM001407 | threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, proteasome core complex, Proteasome RLK-Pelle_LRR-XIV (from iTAK) Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Protein_export |
| coexpression network | CFinderM001434 | Oxidative_phosphorylation positive_regulation_of_autophagy phosphate-containing compound metabolic process, proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, glycolysis, fructose-bisphosphate aldolase activity, inorganic diphosphatase activity, hydrogen ion transmembrane transporter activity, |
| coexpression network | CFinderM001606 | LIM Transcription_Regulator(from iTAK) mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), proton-transporting two-sector ATPase complex, catalytic domain, proton-transporting ATP synthase complex, catalytic core F(1), ATP biosynthetic process, ATP metabolic process, ATP_catabolic_process actin cytoskeleton organization, proton transport, ATP synthesis coupled proton transport, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
| coexpression network | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum U4/U6_x_U5_tri-snRNP_complex intracellular protein transport, GTP binding, intracellular, nuclear mRNA splicing, via spliceosome, small GTPase mediated signal transduction, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 19 | 79 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.