|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | LIM Transcription_Regulator(from iTAK) | 0.001499414 | GFam | | mitochondrial proton-transporting ATP synthase complex, catalytic core F(1), | 0.008235959 | GO:0000275 | | proton-transporting two-sector ATPase complex, catalytic domain, | 0.008235959 | GO:0033178 | | proton-transporting ATP synthase complex, catalytic core F(1), | 0.008235959 | GO:0045261 | | ATP biosynthetic process, | 0.021148213 | GO:0006754 | | ATP metabolic process, | 0.021148213 | GO:0046034 | | ATP_catabolic_process | 0.021148213 | GO:0006200 | | actin cytoskeleton organization, | 0.024436735 | GO:0030036 | | proton transport, | 0.024436735 | GO:0015992 | | ATP synthesis coupled proton transport, | 0.026374625 | GO:0015986 | | ATP hydrolysis coupled proton transport, | 0.026464909 | GO:0015991 | | Phagosome | 0.047710429 | KEGG | | Oxidative_phosphorylation | 0.047710429 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000024G1490 | ATP synthase alpha/beta family protein | AT5G08690 (0.00E+00) | | PH01000067G1430 | RING/FYVE/PHD zinc finger superfamily protein | AT1G32810 (6.50E-86) | | PH01000154G1080 | GATA type zinc finger transcription factor family protein | AT2G39900 (3.10E-87) | | PH01000781G0080 | actin 3 | AT3G53750 (0.00E+00) | | PH01000818G0250 | profilin 1 | AT2G19760 (1.50E-56) | | PH01000948G0110 | Zinc finger C-x8-C-x5-C-x3-H type family protein | AT1G21580 (1.00E-121) | | PH01001119G0320 | Protein of unknown function (DUF2361) | AT1G04230 (1.60E-37) | | PH01002580G0020 | RNA recognition motif (RRM)-containing protein | AT3G23900 (1.30E-28) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000173 | response to oxidative stress,
peroxidase activity,
heme binding,
oxidation-reduction process,
Phenylpropanoid_biosynthesis
Phenylalanine_metabolism
Methane_metabolism
| details | | CFinderM000175 | Ribosome
translation,
Ribosome
small ribosomal subunit,
structural constituent of ribosome,
intracellular,
eukaryotic translation elongation factor 1 complex,
translational elongation,
translation elongation factor activity,
| details | | CFinderM000505 | Phagosome
regulation of actin filament polymerization,
cytoskeleton,
GRAS Transcription_Regulator(from PlantTFDB)
Rho GDP-dissociation inhibitor activity,
| details | | CFinderM000519 | LIM Transcription_Regulator(from iTAK)
mitochondrial inner membrane,
| details | | CFinderM000534 | CMGC_GSK (from iTAK)
transcription factor TFIID complex,
intracellular,
Basal_transcription_factors
Phagosome
| details | | CFinderM000660 | Phagosome
mitochondrial inner membrane,
GTnc GlycosylTransferases
| details | | CFinderM000834 | Ubiquitin_mediated_proteolysis
| details | | CFinderM000910 | translation,
phosphopyruvate hydratase complex,
Ribosome
intracellular,
small ribosomal subunit,
phosphopyruvate hydratase activity,
structural constituent of ribosome,
glycolysis,
Methane_metabolism
RNA_degradation
Glycolysis_/_Gluconeogenesis
| details | | CFinderM000946 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
C3H Transcription_Regulator(from PlantTFDB)
actin cytoskeleton organization,
transcription initiation, DNA-dependent,
mitochondrial respiratory chain,
sister_chromatid_cohesion
chromosome condensation,
CMGC_MAPK (from iTAK)
actin binding,
chromosome organization,
ribulose-phosphate 3-epimerase activity,
| details | | CFinderM001233 | Ribosome
translation,
structural constituent of ribosome,
intracellular,
Ribosome
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
ATP synthesis coupled proton transport,
small ribosomal subunit,
rRNA binding,
hydrogen ion transmembrane transporter activity,
Oxidative_phosphorylation
| details | | CFinderM001407 | threonine-type endopeptidase activity,
endopeptidase activity,
proteolysis involved in cellular protein catabolic process,
proteasome core complex,
Proteasome
RLK-Pelle_LRR-XIV (from iTAK)
Protein_processing_in_endoplasmic_reticulum
proteasome core complex, alpha-subunit complex,
Protein_export
| details | | CFinderM001434 | Oxidative_phosphorylation
positive_regulation_of_autophagy
phosphate-containing compound metabolic process,
proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
ATP hydrolysis coupled proton transport,
glycolysis,
fructose-bisphosphate aldolase activity,
inorganic diphosphatase activity,
hydrogen ion transmembrane transporter activity,
| details | | CFinderM001570 | cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors
| details | | CFinderM001766 | proton-transporting ATP synthase complex, catalytic core F(1),
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1),
proton-transporting two-sector ATPase complex, catalytic domain,
mitochondrial outer membrane,
ATP metabolic process,
anion transport,
ATP biosynthetic process,
ATP_catabolic_process
regulation_of_anion_transport
proton transport,
ATP synthesis coupled proton transport,
fructose-bisphosphate aldolase activity,
voltage-gated anion channel activity,
ATP hydrolysis coupled proton transport,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
hydrogen ion transporting ATP synthase activity, rotational mechanism,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001786 | lipid metabolic process,
| details | | CFinderM001804 | | details |
4.Expression profilings |
