PH01002741G0240's details annotation
1.Annotation
ICBR annotation: DHHC zinc finger domain containing protein, expressed
Blast result AT3G60800 : 1.00E-118
Blast annotation: DHHC-type zinc finger family protein
2.Location
Scaffold: PH01002741
Strand: +
| Region | Start | End |
| gene | 148635 | 150561 |
| mRNA | 148635 | 150561 |
| exon | 148635 | 149130 |
| exon | 149370 | 149405 |
| exon | 149895 | 150561 |
| CDS | 148942 | 149130 |
| CDS | 149370 | 149405 |
| CDS | 149895 | 150155 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000253 | GT47 GlycosylTransferases sialyltransferase activity, Mismatch_repair mismatched DNA binding, protein glycosylation, DNA_replication |
| coexpression network | CFinderM000351 | katanin_complex SAGA-type_complex |
| coexpression network | CFinderM001088 | CBM20 Carbohydrate-Binding_Modules GH77 Glycoside_Hydrolases katanin_complex microtubule_severing SNF2 Transcription_Regulator(from iTAK) Starch_and_sucrose_metabolism 4-alpha-glucanotransferase activity, starch_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01529.19 | DHHC | 131 | 257 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.