PH01003000G0080's details annotation
1.Annotation
ICBR annotation: nicotinate phosphoribosyltransferase family domain containing protein, expressed
Blast result AT4G36940 : 2.00E-103
Blast annotation: nicotinate phosphoribosyltransferase 1
2.Location
Scaffold: PH01003000
Strand: +
| Region | Start | End |
| gene | 66667 | 71795 |
| mRNA | 66667 | 71795 |
| exon | 66667 | 67195 |
| exon | 67258 | 67359 |
| exon | 68321 | 68437 |
| exon | 69058 | 69116 |
| exon | 70181 | 70355 |
| exon | 70818 | 70952 |
| exon | 71045 | 71143 |
| exon | 71233 | 71795 |
| CDS | 67082 | 67195 |
| CDS | 67258 | 67359 |
| CDS | 68321 | 68437 |
| CDS | 69058 | 69116 |
| CDS | 70181 | 70355 |
| CDS | 70818 | 70952 |
| CDS | 71045 | 71143 |
| CDS | 71233 | 71247 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000936 | NAD biosynthetic process, phospholipid transport, nicotinate-nucleotide diphosphorylase (carboxylating) activity, nicotinate phosphoribosyltransferase activity, phospholipid-translocating ATPase activity, |
| coexpression network | CFinderM001236 | nicotinate-nucleotide diphosphorylase (carboxylating) activity, nicotinate phosphoribosyltransferase activity, NAD biosynthetic process, Endocytosis protein ubiquitination, ubiquitin ligase complex, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04095.15 | NAPRTase | 135 | 235 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004514 | nicotinate-nucleotide diphosphorylase (carboxylating) activity |
| GO:0004516 | nicotinate phosphoribosyltransferase activity |
| GO:0005737 | cytoplasm |
| GO:0009435 | NAD biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.