PH01003569G0110's details annotation
1.Annotation
ICBR annotation: domain of unknown function domain containing protein, expressed
Blast result AT5G26740 : 3.20E-60
Blast annotation: Protein of unknown function (DUF300)
2.Location
Scaffold: PH01003569
Strand: -
| Region | Start | End |
| gene | 76816 | 78605 |
| mRNA | 76816 | 78605 |
| exon | 76816 | 77778 |
| exon | 77908 | 78141 |
| exon | 78278 | 78605 |
| CDS | 77464 | 77778 |
| CDS | 77908 | 78141 |
| CDS | 78278 | 78394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001372 | Spliceosome GT32 GlycosylTransferases Golgi stack, AGC_NDR (from iTAK) GTnc GlycosylTransferases thiol oxidase activity, nucleotide binding, snRNA_binding |
| coexpression network | CFinderM001373 | GTnc GlycosylTransferases phospholipid transport, cellular metabolic process, cation transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03619.15 | Solute_trans_a | 1 | 86 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.