PH01003968G0050's details annotation
1.Annotation
ICBR annotation: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed
Blast result AT1G63970 : 7.70E-80
Blast annotation: isoprenoid F
2.Location
Scaffold: PH01003968
Strand: +
| Region | Start | End |
| gene | 51747 | 55027 |
| mRNA | 51747 | 55027 |
| exon | 51747 | 53291 |
| exon | 53392 | 53522 |
| exon | 54677 | 55027 |
| CDS | 52985 | 53291 |
| CDS | 53392 | 53522 |
| CDS | 54677 | 54910 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001540 | DNA polymerase III complex, alpha-Linolenic_acid_metabolism Fatty_acid_metabolism Terpenoid_backbone_biosynthesis 3-hydroxyacyl-CoA_dehydrogenase_activity 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, peptide-methionine-(S)-S-oxide reductase activity, fatty acid metabolic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001541 | Terpenoid_backbone_biosynthesis 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 1,3-beta-D-glucan synthase complex, (1->3)-beta-D-glucan biosynthetic process, terpenoid biosynthetic process, iron-sulfur cluster assembly, |
| coexpression network | CFinderM001542 | guanyl-nucleotide exchange factor activity, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, small GTPase mediated signal transduction, signal transduction, terpenoid biosynthetic process, cellular component organization, Terpenoid_backbone_biosynthesis actin cytoskeleton organization, intracellular, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02542.15 | YgbB | 67 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Terpenoid backbone biosynthesis | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.1] | ko00900 | K01770 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008685 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity |
| GO:0016114 | terpenoid biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.