PH01005307G0030's details annotation
1.Annotation
ICBR annotation: pyridine nucleotide-disulphide oxidoreductase domain containing protein, expressed
Blast result AT4G32360 : 2.40E-74
Blast annotation: Pyridine nucleotide-disulphide oxidoreductase family protein
2.Location
Scaffold: PH01005307
Strand: -
| Region | Start | End |
| gene | 5123 | 11331 |
| mRNA | 5123 | 11331 |
| exon | 5123 | 5699 |
| exon | 6111 | 6253 |
| exon | 6397 | 6440 |
| exon | 6539 | 6602 |
| exon | 6677 | 6872 |
| exon | 7793 | 7854 |
| exon | 8042 | 8107 |
| exon | 8340 | 8382 |
| exon | 8628 | 8689 |
| exon | 10581 | 11331 |
| CDS | 5463 | 5699 |
| CDS | 6111 | 6253 |
| CDS | 6397 | 6440 |
| CDS | 6539 | 6602 |
| CDS | 6677 | 6872 |
| CDS | 7793 | 7854 |
| CDS | 8042 | 8107 |
| CDS | 8340 | 8382 |
| CDS | 8628 | 8689 |
| CDS | 10581 | 11148 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000713 | signal peptide processing, tRNA modification, tRNA_guanylyltransferase_activity F-actin capping protein complex, actin cytoskeleton organization, WASH_complex |
| coexpression network | CFinderM001203 | SNARE_interactions_in_vesicular_transport ubiquitin-dependent protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.