PH01006466G0040's details annotation
1.Annotation
ICBR annotation: ranBP1 domain containing protein, expressed
Blast result AT5G58590 : 1.40E-59
Blast annotation: RAN binding protein 1
2.Location
Scaffold: PH01006466
Strand: +
| Region | Start | End |
| gene | 11338 | 16605 |
| mRNA | 11338 | 16605 |
| exon | 11338 | 12307 |
| exon | 12400 | 12551 |
| exon | 12671 | 12796 |
| exon | 15141 | 16605 |
| CDS | 12159 | 12307 |
| CDS | 12400 | 12551 |
| CDS | 12671 | 12796 |
| CDS | 15141 | 15331 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001812 | intracellular transport, 5'-3' exoribonuclease activity, nucleobase-containing compound metabolic process, exonuclease activity, Ribosome_biogenesis_in_eukaryotes RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00638.17 | Ran_BP1 | 37 | 154 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046907 | intracellular transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.