CFinderM001812's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
intracellular transport,0.003936515GO:0046907
5'-3' exoribonuclease activity,0.011024827GO:0004534
nucleobase-containing compound metabolic process,0.014849055GO:0006139
exonuclease activity,0.026153291GO:0004527
Ribosome_biogenesis_in_eukaryotes0.030405325KEGG
RNA_degradation0.030405325KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000174G0870exoribonuclease 4AT1G54490 (0.00E+00)
PH01000766G0350-AT1G03290 (1.00E-51)
PH01001488G0340-AT5G11700 (1.00E-120)
PH01001798G0090-- (-)
PH01003929G0140gamma carbonic anhydrase 1AT1G19580 (5.00E-124)
PH01006466G0040RAN binding protein 1AT5G58590 (1.40E-59)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000112SNF2 Transcription_Regulator(from iTAK)
chromatin remodeling,
ATP-dependent chromatin remodeling,
CE8 Carbohydrate_Esterases
nucleic acid binding,
helicase activity,
5'-3' exoribonuclease activity,
nucleosome binding,
GT1 GlycosylTransferases
cell wall modification,
nucleus,
cell wall,
nucleobase-containing compound metabolic process,
exonuclease activity,
details
CFinderM000201RLK-Pelle_CrRLK1L-1 (from iTAK)
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM000623intracellular,
Ribosome
translation,
structural constituent of ribosome,
HB-other Transcription_Regulator(from PlantTFDB)
details
CFinderM001024poly(A)+ mRNA export from nucleus,
nuclear pore,
details
CFinderM001305SNF2 Transcription_Regulator(from iTAK)
5'-3' exoribonuclease activity,
nucleic acid binding,
intracellular,
large ribosomal subunit,
nucleobase-containing compound metabolic process,
exonuclease activity,
details
CFinderM001353TKL-Pl-7 (from iTAK)
Others Transcription_Regulator(from iTAK)
details
CFinderM001594Steroid_biosynthesis
cholestenol delta-isomerase activity,
sterol metabolic process,
details
CFinderM001816transcription factor TFIIF complex,
Basal_transcription_factors
transcription initiation from RNA polymerase II promoter,
protein catabolic process,
details

4.Expression profilings