CFinderM000396's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Steroid_hormone_biosynthesis0.04978869KEGG
Drug_metabolism_-_other_enzymes0.04978869KEGG
Pentose_and_glucuronate_interconversions0.04978869KEGG
Retinol_metabolism0.04978869KEGG
Drug_metabolism_-_cytochrome_P4500.04978869KEGG
Ascorbate_and_aldarate_metabolism0.04978869KEGG
Metabolism_of_xenobiotics_by_cytochrome_P4500.04978869KEGG
Porphyrin_and_chlorophyll_metabolism0.04978869KEGG

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000005G3020basic helix-loop-helix (bHLH) DNA-binding superfamily proteinAT3G24140 (1.40E-81)
PH01000031G2680-- (-)
PH01000205G0080AMP-dependent synthetase and ligase family proteinAT1G20490 (2.60E-60)
PH01000339G0160-AT5G09580 (4.50E-85)
PH01000856G0430NAC domain containing protein 35AT2G02450 (1.00E-78)
PH01001657G0190white-brown complex homolog protein 11AT1G17840 (5.00E-132)
PH01004097G0070myb domain protein 60AT1G08810 (2.40E-43)
PH01004564G0080UDP-glucosyl transferase 85A2AT1G22360 (7.30E-53)
PH01004625G0060-- (-)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000084cell wall macromolecule catabolic process,
chitin catabolic process,
WRKY Transcription_Regulator(from PlantTFDB)
defense response to fungus,
ammonium_transport
ammonium_transmembrane_transport
defense response to bacterium,
metabolic process,
chitinase activity,
details
CFinderM000188ubiquitin-dependent protein catabolic process,
details
CFinderM000224Others Transcription_Regulator(from iTAK)
mediator complex,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds,
RNA_polymerase_II_transcription_cofactor_activity
regulation of transcription from RNA polymerase II promoter,
nitrogen compound metabolic process,
Drug_metabolism_-_other_enzymes
Steroid_hormone_biosynthesis
Retinol_metabolism
Drug_metabolism_-_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
Metabolism_of_xenobiotics_by_cytochrome_P450
Pentose_and_glucuronate_interconversions
Ascorbate_and_aldarate_metabolism
details
CFinderM000395NAC Transcription_Regulator(from PlantTFDB)
regulation of transcription, DNA-dependent,
details
CFinderM000397clathrin_coat_assembly
clathrin_coat
clathrin_binding
1-phosphatidylinositol_binding
Spliceosome
phospholipid binding,
details
CFinderM000522GARP-G2-like Transcription_Regulator(from iTAK)
G2-like Transcription_Regulator(from PlantTFDB)
metabolic process,
potassium_ion_transmembrane_transport
membrane,
Drug_metabolism_-_other_enzymes
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Retinol_metabolism
Metabolism_of_xenobiotics_by_cytochrome_P450
Porphyrin_and_chlorophyll_metabolism
Steroid_hormone_biosynthesis
Ascorbate_and_aldarate_metabolism
details
CFinderM000632Zeatin_biosynthesis
NAC Transcription_Regulator(from PlantTFDB)
WRKY Transcription_Regulator(from PlantTFDB)
details
CFinderM000652electron carrier activity,
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen,
iron ion binding,
heme binding,
ubiquitin ligase complex,
protein ubiquitination,
oxidation-reduction process,
details
CFinderM001007RLK-Pelle_LRR-Xa (from iTAK)
Terpenoid_backbone_biosynthesis
isopentenyl-diphosphate delta-isomerase activity,
coproporphyrinogen oxidase activity,
porphyrin-containing compound biosynthetic process,
transferase activity, transferring phosphorus-containing groups,
isoprenoid biosynthetic process,
details
CFinderM001244iron-sulfur cluster assembly,
details
CFinderM001289RLK-Pelle_LRR-Xa (from iTAK)
alternative_oxidase_activity
Metabolism_of_xenobiotics_by_cytochrome_P450
Ascorbate_and_aldarate_metabolism
Retinol_metabolism
Porphyrin_and_chlorophyll_metabolism
Pentose_and_glucuronate_interconversions
Drug_metabolism_-_cytochrome_P450
Steroid_hormone_biosynthesis
Drug_metabolism_-_other_enzymes
details
CFinderM001342details
CFinderM001538oligopeptide transport,
transporter activity,
details

4.Expression profilings


Show details about module gene expression profiling