CFinderM000404's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Valine,_leucine_and_isoleucine_degradation0.005513275KEGG
Benzoate_degradation0.009644463KEGG
RWP-RK Transcription_Regulator(from iTAK)0.02065379GFam
Nin-like Transcription_Regulator(from PlantTFDB)0.02065379GFam
Biosynthesis_of_unsaturated_fatty_acids0.022535648KEGG
alpha-Linolenic_acid_metabolism0.022535648KEGG
Fatty_acid_metabolism0.022535648KEGG
Peroxisome0.035170151KEGG
G2-like Transcription_Regulator(from PlantTFDB)0.049348834GFam
GARP-G2-like Transcription_Regulator(from iTAK)0.049348834GFam

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000114G1150Protein of unknown function (DUF1644)AT4G31410 (2.20E-70)
PH01000236G1170Plant regulator RWP-RK family proteinAT4G35270 (4.00E-162)
PH01000732G0370protein kinase family protein / WD-40 repeat family proteinAT4G29380 (0.00E+00)
PH01001184G0040Arabidopsis NAC domain containing protein 87AT5G18270 (4.40E-75)
PH01001535G0300Homeodomain-like superfamily proteinAT4G37180 (3.20E-39)
PH01001580G0120peroxisomal 3-ketoacyl-CoA thiolase 3AT2G33150 (0.00E+00)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000578extracellular matrix,
NF-YC Transcription_Regulator(from PlantTFDB)
protein-disulfide_reductase_activity
intracellular_signal_transduction
metallopeptidase activity,
NAC Transcription_Regulator(from PlantTFDB)
details
CFinderM001143endoplasmic reticulum membrane,
protein N-linked glycosylation via asparagine,
Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
Various_types_of_N-glycan_biosynthesis
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
N-Glycan_biosynthesis
response to stress,
details
CFinderM001269regulation of translational initiation,
'de novo' IMP biosynthetic process,
autophagy,
phosphoribosylformylglycinamidine cyclo-ligase activity,
eukaryotic translation initiation factor 3 complex,
cytoplasm,
ribosome binding,
details
CFinderM001324Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
metabolic process,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_metabolism
alpha-Linolenic_acid_metabolism
details
CFinderM001380Valine,_leucine_and_isoleucine_degradation
RLK-Pelle_LRR-XIV (from iTAK)
Benzoate_degradation
GRAS Transcription_Regulator(from PlantTFDB)
Fatty_acid_metabolism
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Peroxisome
details

4.Expression profilings