|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | regulation of translational initiation, | 0.006245313 | GO:0006446 | | 'de novo' IMP biosynthetic process, | 0.006245313 | GO:0006189 | | autophagy, | 0.006245313 | GO:0006914 | | phosphoribosylformylglycinamidine cyclo-ligase activity, | 0.018343242 | GO:0004641 | | eukaryotic translation initiation factor 3 complex, | 0.028047764 | GO:0005852 | | cytoplasm, | 0.028047764 | GO:0005737 | | ribosome binding, | 0.039694038 | GO:0043022 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000038G0790 | eukaryotic translation initiation factor 3K | AT4G33250 (7.10E-91) | | PH01000043G0380 | - | AT4G30790 (0.00E+00) | | PH01000442G0350 | Ribosomal protein S5 domain 2-like superfamily protein | AT3G49080 (1.10E-90) | | PH01000732G0370 | protein kinase family protein / WD-40 repeat family protein | AT4G29380 (0.00E+00) | | PH01000765G0580 | - | AT4G30790 (0.00E+00) | | PH01000985G0340 | phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) | AT3G55010 (3.40E-77) | | PH01001314G0520 | DNA-binding bromodomain-containing protein | AT5G55040 (4.60E-46) | | PH01002144G0060 | - | AT2G46550 (3.90E-34) | | PH01006426G0040 | RING/FYVE/PHD-type zinc finger family protein | AT1G29800 (1.00E-165) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000404 | Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
RWP-RK Transcription_Regulator(from iTAK)
Nin-like Transcription_Regulator(from PlantTFDB)
Biosynthesis_of_unsaturated_fatty_acids
alpha-Linolenic_acid_metabolism
Fatty_acid_metabolism
Peroxisome
G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
| details | | CFinderM000826 | dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
| details | | CFinderM001134 | Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
| details | | CFinderM001324 | Valine,_leucine_and_isoleucine_degradation
Benzoate_degradation
metabolic process,
Biosynthesis_of_unsaturated_fatty_acids
Fatty_acid_metabolism
alpha-Linolenic_acid_metabolism
| details | | CFinderM001359 | CMGC_Pl-Tthe (from iTAK)
Regulation_of_autophagy
C2C2-Dof Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001428 | nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
| details | | CFinderM001438 | HB-other Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001471 | regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
WRKY Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism
TAZ Transcription_Regulator(from iTAK)
Group-Pl-3 (from iTAK)
CMGC_CLK (from iTAK)
NF-YC Transcription_Regulator(from PlantTFDB)
HB-other Transcription_Regulator(from PlantTFDB)
arginine biosynthetic process,
'de novo' IMP biosynthetic process,
eukaryotic translation elongation factor 1 complex,
argininosuccinate synthase activity,
phosphoribosylformylglycinamidine cyclo-ligase activity,
| details | | CFinderM001749 | phosphoribosylformylglycinamidine cyclo-ligase activity,
autophagy,
'de novo' IMP biosynthetic process,
cellular protein metabolic process,
| details | | CFinderM001773 | Group-Pl-3 (from iTAK)
phosphoribosylformylglycinamidine cyclo-ligase activity,
'de novo' IMP biosynthetic process,
intracellular,
| details | | CFinderM001790 | regulation of translational initiation,
ribosome binding,
eukaryotic translation initiation factor 3 complex,
translation initiation factor activity,
| details |
4.Expression profilings |
