CFinderM000733's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
TBP-class_protein_binding0.002812236GO:0017025
positive_regulation_of_transcription,_DNA-templated0.005155766GO:0045893
WASH_complex0.006183536GO:0071203
outer membrane,0.006183536GO:0019867
transcription initiation, DNA-dependent,0.020566741GO:0006352
zinc ion binding,0.032514799GO:0008270

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000991G0440Outer membrane OMP85 family proteinAT5G05520 (6.00E-109)
PH01001075G0520-- (-)
PH01002626G0260Zinc finger C-x8-C-x5-C-x3-H type family proteinAT3G21810 (4.40E-11)
PH01004294G0040C2H2 zinc-finger protein SERRATE (SE)AT2G27100 (1.00E-171)
PH01004879G0070-- (-)
PH01005109G0090Cyclin/Brf1-like TBP-binding proteinAT2G01280 (3.10E-42)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000201RLK-Pelle_CrRLK1L-1 (from iTAK)
5'-3' exoribonuclease activity,
nucleobase-containing compound metabolic process,
Ribosome_biogenesis_in_eukaryotes
RNA_degradation
details
CFinderM000214outer membrane,
peptidase activity,
details
CFinderM000734WASH_complex
cytoskeleton,
phagocytosis,
malate metabolic process,
cellular carbohydrate metabolic process,
malate dehydrogenase activity,
L-malate dehydrogenase activity,
details
CFinderM000898WASH_complex
cullin-RING ubiquitin ligase complex,
PHD Transcription_Regulator(from iTAK)
mitotic_spindle_assembly_checkpoint
ubiquitin protein ligase binding,
cysteine-type peptidase activity,
protein serine/threonine phosphatase activity,
details
CFinderM001242mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
details
CFinderM001424WASH_complex
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
Peroxisome
details
CFinderM001581WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
details
CFinderM001679PHD Transcription_Regulator(from iTAK)
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
nucleotidyltransferase activity,
serine-type carboxypeptidase activity,
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
details
CFinderM001830WASH_complex
drug_binding
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis
details
CFinderM001883Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
prephenate_dehydrogenase_activity
SNF2 Transcription_Regulator(from iTAK)
RNA_polymerase
details

4.Expression profilings