|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.004281852 | KEGG | | tyrosine biosynthetic process, | 0.006249902 | GO:0006571 | | prephenate dehydrogenase (NADP+) activity, | 0.008153444 | GO:0004665 | | prephenate_dehydrogenase_activity | 0.008153444 | GO:0008977 | | SNF2 Transcription_Regulator(from iTAK) | 0.009155108 | GFam | | RNA_polymerase | 0.041627531 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000164G0020 | prephenate dehydrogenase family protein | AT1G15710 (6.00E-104) | | PH01000238G0560 | Ras-related small GTP-binding family protein | AT3G62560 (7.10E-91) | | PH01000936G0120 | chromatin remodeling 5 | AT2G13370 (0.00E+00) | | PH01001421G0290 | Oligosaccharyltransferase complex/magnesium transporter family protein | AT2G19340 (7.10E-57) | | PH01002626G0260 | Zinc finger C-x8-C-x5-C-x3-H type family protein | AT3G21810 (4.40E-11) | | PH01004917G0040 | SIN-like family protein | AT5G49530 (9.70E-60) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000733 | TBP-class_protein_binding
positive_regulation_of_transcription,_DNA-templated
WASH_complex
outer membrane,
transcription initiation, DNA-dependent,
zinc ion binding,
| details | | CFinderM000818 | SNF2 Transcription_Regulator(from iTAK)
GTP binding,
Protein_processing_in_endoplasmic_reticulum
intracellular protein transport,
| details | | CFinderM000860 | protein targeting,
drug_binding
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
| details | | CFinderM001242 | mitotic_spindle_assembly_checkpoint
WASH_complex
PHD Transcription_Regulator(from iTAK)
N-Glycan_biosynthesis
Various_types_of_N-glycan_biosynthesis
| details | | CFinderM001276 | GT8 GlycosylTransferases
plant-type cell wall organization,
extracellular region,
| details | | CFinderM001277 | plant-type cell wall organization,
Ether_lipid_metabolism
Glycerophospholipid_metabolism
Endocytosis
extracellular region,
| details | | CFinderM001411 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
RNA metabolic process,
ATP hydrolysis coupled proton transport,
| details | | CFinderM001638 | tRNA methylation,
tRNA (guanine-N1-)-methyltransferase activity,
proton-transporting two-sector ATPase complex, proton-transporting domain,
proton-transporting V-type ATPase, V0 domain,
NAC Transcription_Regulator(from PlantTFDB)
| details | | CFinderM001639 | intracellular_distribution_of_mitochondria
plant-type cell wall organization,
GT8 GlycosylTransferases
extracellular region,
SNF2 Transcription_Regulator(from iTAK)
| details | | CFinderM001711 | intracellular protein transport,
binding,
| details | | CFinderM001776 | Protein_processing_in_endoplasmic_reticulum
U4/U6_x_U5_tri-snRNP_complex
intracellular protein transport,
GTP binding,
intracellular,
nuclear mRNA splicing, via spliceosome,
small GTPase mediated signal transduction,
| details | | CFinderM001841 | proton-transporting V-type ATPase, V0 domain,
proton-transporting two-sector ATPase complex, proton-transporting domain,
| details |
4.Expression profilings |
