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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | cysteine synthase activity, | 0.003093218 | GO:0004124 | | chorismate mutase activity, | 0.003093218 | GO:0004106 | | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis | 0.003125439 | KEGG | | SET Transcription_Regulator(from iTAK) | 0.009341217 | GFam | | cysteine biosynthetic process from serine, | 0.010693761 | GO:0006535 | | aromatic amino acid family biosynthetic process, | 0.010693761 | GO:0009073 | | chorismate metabolic process, | 0.010693761 | GO:0046417 | | SNARE_interactions_in_vesicular_transport | 0.015593043 | KEGG | | Sulfur_metabolism | 0.015593043 | KEGG | | Cysteine_and_methionine_metabolism | 0.029906591 | KEGG |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000155G0900 | chorismate mutase 3 | AT1G69370 (9.90E-98) | | PH01000417G1120 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | AT4G14880 (2.00E-141) | | PH01000436G0090 | Glycoprotein membrane precursor GPI-anchored | AT5G19250 (5.50E-46) | | PH01000783G0230 | Vesicle transport v-SNARE family protein | AT5G39510 (2.70E-80) | | PH01001114G0220 | SET domain group 40 | AT5G17240 (6.00E-117) | | PH01005471G0060 | Endomembrane protein 70 protein family | AT2G01970 (0.00E+00) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000591 | HB-other Transcription_Regulator(from PlantTFDB)
SNARE_interactions_in_vesicular_transport
WASH_complex
actin cytoskeleton,
spliceosomal complex,
pre-mRNA_intronic_binding
| details | | CFinderM000805 | Sulfur_metabolism
cysteine biosynthetic process from serine,
peptide-methionine-(S)-S-oxide reductase activity,
cysteine synthase activity,
Cysteine_and_methionine_metabolism
cellulose biosynthetic process,
chaperone binding,
cellulose synthase (UDP-forming) activity,
| details | | CFinderM000899 | glucose-6-phosphate dehydrogenase activity,
glucose metabolic process,
galactosyltransferase activity,
NADP binding,
Glutathione_metabolism
Pentose_phosphate_pathway
Glycine,_serine_and_threonine_metabolism
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
Glycosaminoglycan_biosynthesis_-_chondroitin_sulfate_/_dermatan_sulfate
Glycosaminoglycan_biosynthesis_-_heparan_sulfate_/_heparin
protein glycosylation,
phosphoserine phosphatase activity,
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides,
chorismate mutase activity,
chorismate metabolic process,
| details | | CFinderM001444 | nucleolus,
SNARE_interactions_in_vesicular_transport
Homologous_recombination
SOS_response
DNA metabolic process,
ribosome biogenesis,
single-stranded DNA binding,
DNA-dependent ATPase activity,
| details | | CFinderM001549 | SNARE_interactions_in_vesicular_transport
vesicle-mediated transport,
intracellular protein transport,
SNAP receptor activity,
structural molecule activity,
| details | | CFinderM001627 | SET Transcription_Regulator(from iTAK)
intracellular protein transport,
SNARE_interactions_in_vesicular_transport
mRNA_surveillance_pathway
| details |
4.Expression profilings |
