|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) | 0.004119137 | GFam | | histone modification, | 0.006184019 | GO:0016570 | | transcription initiation, DNA-dependent, | 0.011218222 | GO:0006352 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000260G0320 | endoplasmatic reticulum retrieval protein 1B | AT2G21600 (8.90E-65) | | PH01000501G0350 | Protein of unknown function (DUF962) | AT1G18720 (1.80E-34) | | PH01000794G0660 | SWIB/MDM2 domain;Plus-3;GYF | AT5G08430 (7.70E-57) | | PH01001683G0270 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT1G26850 (4.20E-83) | | PH01002600G0120 | - | - (-) | | PH01003790G0140 | DDT domain superfamily | AT1G18950 (2.20E-34) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000384 | RNA_transport
transport,
nuclear pore,
| details | | CFinderM000536 | SET Transcription_Regulator(from iTAK)
Others Transcription_Regulator(from iTAK)
| details | | CFinderM000574 | Others Transcription_Regulator(from iTAK)
signal transduction,
| details | | CFinderM000803 | DNA repair,
nucleus,
regulation_of_DNA-templated_transcription,_elongation
histone modification,
cell cycle,
RLK-Pelle_LRR-V (from iTAK)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
base-excision repair,
transcription initiation, DNA-dependent,
regulation of transcription from RNA polymerase II promoter,
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM000918 | GT48 GlycosylTransferases
RLK-Pelle_RLCK-V (from iTAK)
TKL-Pl-4 (from iTAK)
microtubule cytoskeleton organization,
(1->3)-beta-D-glucan biosynthetic process,
cytokinesis
1,3-beta-D-glucan synthase complex,
mRNA_surveillance_pathway
| details | | CFinderM001341 | RLK-Pelle_LRR-II (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
microtubule associated complex,
protein phosphorylation,
microtubule-based movement,
| details | | CFinderM001350 | HB-other Transcription_Regulator(from PlantTFDB)
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
histone modification,
transcription initiation, DNA-dependent,
| details | | CFinderM001399 | RNA_transport
Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
3-dehydroquinate synthase activity,
Base_excision_repair
| details | | CFinderM001537 | vacuolar proton-transporting V-type ATPase, V1 domain,
ATP hydrolysis coupled proton transport,
MYB_related Transcription_Regulator(from PlantTFDB)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
MYB-related Transcription_Regulator(from iTAK)
| details | | CFinderM001752 | spindle pole,
microtubule organizing center,
STE_STE11 (from iTAK)
microtubule cytoskeleton organization,
mRNA_surveillance_pathway
| details |
4.Expression profilings |
