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1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | lipoxygenase activity, | 8.34E-05 | GO:0016165 | | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, | 8.34E-05 | GO:0016702 | | Linoleic_acid_metabolism | 0.002435748 | KEGG | | iron ion binding, | 0.013730279 | GO:0005506 | | metal ion binding, | 0.013730279 | GO:0046872 | | MYB Transcription_Regulator(from PlantTFDB) | 0.032616523 | GFam |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000009G0060 | myb domain protein 33 | AT5G06100 (2.10E-72) | | PH01000121G0990 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | AT1G64110 (0) | | PH01000426G0260 | lipoxygenase 1 | AT1G55020 (0.00E+00) | | PH01000914G0720 | lipoxygenase 1 | AT1G55020 (9.00E-119) | | PH01001523G0110 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | AT5G04370 (1.10E-67) | | PH01003040G0250 | alpha/beta-Hydrolases superfamily protein | AT5G50890 (6.00E-112) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
lipoxygenase activity,
Linoleic_acid_metabolism
iron ion binding,
metal ion binding,
oxidation-reduction process,
MYB Transcription_Regulator(from PlantTFDB)
| details | | CFinderM000320 | nicotinate phosphoribosyltransferase activity,
nicotinate-nucleotide diphosphorylase (carboxylating) activity,
adenylylsulfate_kinase_activity
nicotinate nucleotide salvage,
omega_peptidase_activity
SNARE_interactions_in_vesicular_transport
Nicotinate_and_nicotinamide_metabolism
Nitrogen_metabolism
sulfate assimilation,
NAD biosynthetic process,
nucleoside-triphosphatase activity,
metal ion transmembrane transporter activity,
ER to Golgi vesicle-mediated transport,
magnesium_ion_transport
transmembrane transport,
cis-Golgi network,
Golgi membrane,
| details | | CFinderM000394 | Endocytosis
Alanine,_aspartate_and_glutamate_metabolism
IMP biosynthetic process,
purine ribonucleotide biosynthetic process,
phosphatidylcholine metabolic process,
RLK-Pelle_RLCK-VI (from iTAK)
Ether_lipid_metabolism
| details | | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,
| details | | CFinderM001075 | SET Transcription_Regulator(from iTAK)
histone_lysine_methylation
Linoleic_acid_metabolism
Lysine_degradation
Cysteine_and_methionine_metabolism
lipoxygenase activity,
histone_binding
histone-lysine N-methyltransferase activity,
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen,
oxidation-reduction process,
| details |
4.Expression profilings |
