CFinderM001072's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
nucleus,0.002067114GO:0005634
TLK (from iTAK)0.006873066GFam
Non-homologous_end-joining0.008990581KEGG
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)0.015092655GFam
Homologous_recombination0.020136118KEGG
SNF2 Transcription_Regulator(from iTAK)0.022344242GFam
double-strand break repair,0.022681118GO:0006302
histone modification,0.02493286GO:0016570
DNA metabolic process,0.040727892GO:0006259
transcription initiation, DNA-dependent,0.045188931GO:0006352

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000055G1030DNA repair and meiosis protein (Mre11)AT5G54260 (0.00E+00)
PH01000070G1470DNA repair ATPase-relatedAT2G24420 (2.10E-78)
PH01000141G0210zinc ion binding;DNA bindingAT5G63700 (1.60E-67)
PH01000229G0250tetratricopeptide repeat (TPR)-containing proteinAT5G63200 (1.00E-109)
PH01000287G1140SNF2 domain-containing protein / helicase domain-containing proteinAT2G44980 (6.00E-107)
PH01000606G0880Protein kinase superfamily proteinAT5G20930 (2.00E-114)
PH01001032G0430Tetratricopeptide repeat (TPR)-like superfamily proteinAT5G13230 (0.00E+00)
PH01002747G0070sequence-specific DNA binding transcription factors;DNA binding;DNA bindingAT2G36740 (1.80E-93)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000387double-strand break repair,
DNA metabolic process,
endoplasmic reticulum,
details
CFinderM000410Ribosome_biogenesis_in_eukaryotes
IWS1 Transcription_Regulator(from iTAK)
tyrosine biosynthetic process,
ribosomal_large_subunit_biogenesis
ribosomal_large_subunit_export_from_nucleus
small-subunit processome,
cytoplasm,
details
CFinderM001160TLK (from iTAK)
cell_cortex

details
CFinderM001577double-strand break repair,
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
protein_binding_involved_in_protein_folding
prephenate_dehydrogenase_activity
Non-homologous_end-joining
cullin-RING ubiquitin ligase complex,
DNA metabolic process,
bHLH Transcription_Regulator(from PlantTFDB)
details
CFinderM001640TLK (from iTAK)
transcription factor TFIID complex,
SNF2 Transcription_Regulator(from iTAK)
transcription initiation, DNA-dependent,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details

4.Expression profilings