CFinderM001160's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
TLK (from iTAK)6.83E-06GFam
cell_cortex0.000749953GO:0005938
0.006249609GO:0032065 cortical_protein_anchoring GOslim:biolo

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000004G1210transcription factor-relatedAT2G27230 (1.50E-77)
PH01000606G0880Protein kinase superfamily proteinAT5G20930 (2.00E-114)
PH01000606G0890Protein kinase superfamily proteinAT5G20930 (1.40E-51)
PH01001024G0060Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domainAT5G19420 (0.00E+00)
PH01001169G0070Basic-leucine zipper (bZIP) transcription factor family proteinAT5G11260 (4.40E-27)
PH01001547G0210sucrose phosphate synthase 1FAT5G20280 (1.00E-143)
PH01003320G0120bromodomain and extraterminal domain protein 10AT3G01770 (1.40E-75)
PH01003492G0050A20/AN1-like zinc finger family proteinAT1G12440 (2.30E-36)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000544details
CFinderM000566cullin-RING ubiquitin ligase complex,
ubiquitin protein ligase binding,
ubiquitin-dependent protein catabolic process,
peroxisome organization,
integral_component_of_peroxisomal_membrane
PHD Transcription_Regulator(from iTAK)
bZIP Transcription_Regulator(from PlantTFDB)
details
CFinderM001072nucleus,
TLK (from iTAK)
Non-homologous_end-joining
SWI/SNF-BAF60b Transcription_Regulator(from iTAK)
Homologous_recombination
SNF2 Transcription_Regulator(from iTAK)
double-strand break repair,
histone modification,
DNA metabolic process,
transcription initiation, DNA-dependent,
details
CFinderM001210Peroxisome
protein refolding,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
cellular protein metabolic process,
details
CFinderM001231cullin-RING ubiquitin ligase complex,
RNA modification,
ubiquitin-dependent protein catabolic process,
details
CFinderM001310mRNA_surveillance_pathway
binding,
details
CFinderM001357bHLH Transcription_Regulator(from PlantTFDB)
SET Transcription_Regulator(from iTAK)
Lysine_degradation
nucleus,
histone_methylation
histone_lysine_methylation
protein dimerization activity,
details
CFinderM001577double-strand break repair,
tyrosine biosynthetic process,
prephenate dehydrogenase (NADP+) activity,
protein_binding_involved_in_protein_folding
prephenate_dehydrogenase_activity
Non-homologous_end-joining
cullin-RING ubiquitin ligase complex,
DNA metabolic process,
bHLH Transcription_Regulator(from PlantTFDB)
details
CFinderM001607mediator complex,
nucleus,
regulation of transcription from RNA polymerase II promoter,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
RNA_polymerase_II_transcription_cofactor_activity
details
CFinderM001640TLK (from iTAK)
transcription factor TFIID complex,
SNF2 Transcription_Regulator(from iTAK)
transcription initiation, DNA-dependent,
Nucleotide_excision_repair
Ubiquitin_mediated_proteolysis
details
CFinderM001702ribosome biogenesis,
nucleolus,
eukaryotic translation initiation factor 3 complex,
RNA_transport
details
CFinderM001810mitosis,
spliceosomal complex,
Spliceosome
details
CFinderM001853peroxisome organization,
integral_component_of_peroxisomal_membrane
cullin-RING ubiquitin ligase complex,
bZIP Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings